rs223541419 SNP Detail

Summary

• ID
  rs223541419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:82222662 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT TTCAGGCCAG CCAGGGCTAC
  Y
  AGGTAGAGAG ACCCTATCTC CGAAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325034239	CHEV_15_82168891	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223541419					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:82222662 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7419	CpG island 7419	190 bp proximal
Naga	N-acetyl galactosaminidase, alpha	within coordinates
Pheta2	PH domain containing endocytic trafficking adaptor 2	486 bp upstream
Rr506479	regulatory region 506479	311 bp proximal
Rr506480	regulatory region 506480	509 bp proximal
Rr506481	regulatory region 506481	643 bp proximal
Rr506482	regulatory region 506482	1907 bp proximal
Tssr4669	transcription start site region 4669	403 bp downstream
Tssr135542	transcription start site region 135542	1441 bp upstream
Tssr135543	transcription start site region 135543	309 bp downstream
Tssr135544	transcription start site region 135544	340 bp downstream
Tssr135545	transcription start site region 135545	396 bp downstream