rs223550902 SNP Detail

Summary

• ID
  rs223550902
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr19:61214118 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGGG GTGGGGCCGG AAGTACGAAA
  T
  CTGTCCCAGT GAGTCCGCGA CTACG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325886308	CHEV_19_61301583	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223550902					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:61214118 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11146	CpG island 11146			within coordinates
Csf2ra	colony stimulating factor 2 receptor, alpha, low-affinity (granulocyte-macrophage)			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Gm56644	predicted gene, 56644			within coordinates
Rr406075	regulatory region 406075			1099 bp downstream
Rr406076	regulatory region 406076			252 bp upstream
Rr406077	regulatory region 406077			1546 bp upstream
Rr550838	regulatory region 550838			1488 bp distal
Rr550839	regulatory region 550839			1539 bp distal
Rr550840	regulatory region 550840			1158 bp proximal
Rr550841	regulatory region 550841			1686 bp proximal
Tssr157374	transcription start site region 157374			1240 bp downstream
Tssr157375	transcription start site region 157375			1197 bp downstream
Tssr157376	transcription start site region 157376			1135 bp downstream
Tssr157377	transcription start site region 157377			1070 bp downstream
Tssr157378	transcription start site region 157378			996 bp downstream
Tssr157379	transcription start site region 157379			918 bp downstream
Tssr157380	transcription start site region 157380			1812 bp upstream
Tssr160090	transcription start site region 160090			1074 bp upstream
Tssr160091	transcription start site region 160091			1050 bp upstream
Tssr160092	transcription start site region 160092			926 bp upstream
Tssr160093	transcription start site region 160093			831 bp upstream
Tssr160094	transcription start site region 160094			769 bp upstream
Tssr160095	transcription start site region 160095			682 bp upstream
Tssr160096	transcription start site region 160096			234 bp upstream
Tssr160097	transcription start site region 160097			38 bp upstream
Tssr160098	transcription start site region 160098			396 bp downstream
Tssr160099	transcription start site region 160099			604 bp downstream
Tssr160100	transcription start site region 160100			657 bp downstream
Tssr160101	transcription start site region 160101			970 bp downstream
Tssr160102	transcription start site region 160102			1513 bp downstream
Tssr160103	transcription start site region 160103			1625 bp downstream