rs223551718 SNP Detail

Summary

• ID
  rs223551718
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:136497147 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAGTATATG TGTATAATGT
  ACACTTTAAA TATGTTTTAG GTGTATATGT CCTGGTTTTA GTTTCTTAAA ATAACTATGG
  GTGTGCTACT GATTAAAGTT GTGATGCCAC TAAATTTCAG TTGTATGTAG CACAATTAGG
  TCAGTTGTAT GTAGCACATT GGGTCAGTAT ACGTATAATT TAATATAATT TTCTTATTCT
  W
  CCCGTTGTTT CTTACTAGTC TAAAAACTTG TGTTTTCATA AACATCTGTC ATTCATATGT
  ATAGTTGCTT TTTTGGTTGC TTATGTAACC CAAGTTTAAA TCAGTCTGTT GTCAAATTAA
  GTGCTGTTAT AATGTCGATT GGTTTGGGCT ATCTCTATTA CCCGAAACAA ATACTCTTAG
  AAATAATAGG ATATAATTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370211571	MGP_WTSI_6_136468670	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223551718					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370211571	MGP_WTSI_6_136468670	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:136497147 () rs orientation: forward

Symbol	Name	Function Class
Atf7ip	activating transcription factor 7 interacting protein	within coordinates
Cpgi18104	CpG island 18104	809 bp distal
Gm44140	predicted gene, 44140	1433 bp upstream
Rr133547	regulatory region 133547	1547 bp distal
Rr145858	regulatory region 145858	within coordinates
Rr145859	regulatory region 145859	1053 bp proximal
Rr400014	regulatory region 400014	1280 bp downstream
Rr400015	regulatory region 400015	883 bp downstream
Tssr59315	transcription start site region 59315	1339 bp downstream
Tssr59316	transcription start site region 59316	1298 bp downstream
Tssr59317	transcription start site region 59317	1274 bp downstream
Tssr59318	transcription start site region 59318	254 bp upstream
Tssr63803	transcription start site region 63803	1648 bp upstream
Tssr63804	transcription start site region 63804	1377 bp upstream
Tssr63805	transcription start site region 63805	1072 bp upstream