rs223554740 SNP Detail

Summary

• ID
  rs223554740
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:19192269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CGAGGAAGGG AGGGGCTGCC
  GGCGGGCAGG GGAGGGGGCT TCCTGGAGGG AAGAGACCGG GCGGAAGCGT TCTGCAGAGG
  GACCGGAGAA GAGTCCAAAG ACAGGGGCGC CCCTAGGGGT CGGGCTGGGC TGGGGCTGTG
  GGGAGGAGGG AGCAGAGAGG CCTCAAAGTC ATGGGAAGCG TTGGTCTGGG CTGTGGAGCC
  S
  GGAAAGGAGT CGAGACTGGC GGGGTCAGTG GTCCGGGAGG GCGAGGGGTT CTATGGCTGG
  ACTCAGGCAG GGCTCCCCAA GGGGCTGGGC CCCACTCACC GTGTCCGAGT TTCGATCGTT
  GCCCGGGGCC AGCGCCGTCC TCGAAGACAT CTTCTCTGGG GTCCCAGAAG GGAAAGGGAC
  AGGGGCGGCC GGGCGGGGGG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370749826	MGP_WTSI_7_20043693	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223554740					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370749826	MGP_WTSI_7_20043693	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:19192269 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18489	CpG island 18489	within coordinates
Mark4	MAP/microtubule affinity regulating kinase 4	Intron
Rr400149	regulatory region 400149	412 bp upstream
Rr643146	regulatory region 643146	within coordinates
Rr643147	regulatory region 643147	467 bp proximal
Tssr64858	transcription start site region 64858	586 bp upstream
Tssr70918	transcription start site region 70918	328 bp downstream
Tssr70919	transcription start site region 70919	384 bp downstream
Tssr70920	transcription start site region 70920	404 bp downstream
Tssr70921	transcription start site region 70921	435 bp downstream
Tssr70922	transcription start site region 70922	457 bp downstream
Tssr70923	transcription start site region 70923	891 bp downstream