rs223556634 SNP Detail

Summary

• ID
  rs223556634
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:58893002 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTGAAGAGC TTCTGCGGGT
  GAAGGGCAGG GGTGCACTCA CCTGGGGGTC CTTTGCAGCG TGGCCTTGAT GAAGTCCTTG
  GCGTCCTCAC TCAGATGAGC AGCCGTGGGA CTGCTCCAGG AGACCCGCCC CTCCAAAACA
  TTGAGCAAGG TGGCGCGGTC ACTCTCTCCA GCAAATGGGG ATGAGCAGGT GAGGCTGGAA
  R
  CAGAGAAAGT GTGGAAGCTC ACTCTCGAAG AAGATTCCCT GACTGGATGT GTGCCACGCT
  CATCTAGACC TGAGGATTCT GGGAAATGCT TCCGACTGGA CCAGAACAAT CCAGGATTAG
  CTTGGAGCAG GGATCCGGGC TTTGTTAGCA GGGCTCAGAC TGGGATGAGA GTCTAGGTTC
  GGACTGAGGT GTGGATTAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323695599	CHEV_11_58815678	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223556634					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:58893002 () rs orientation: forward

Symbol	Name	Function Class
Gm10435	predicted gene 10435	734 bp upstream
Obscn	obscurin, cytoskeletal calmodulin and titin-interacting RhoGEF	within coordinates
Tssr101782	transcription start site region 101782	744 bp upstream
Tssr101783	transcription start site region 101783	781 bp upstream
Tssr101784	transcription start site region 101784	798 bp upstream
Tssr108189	transcription start site region 108189	6 bp downstream
Tssr108190	transcription start site region 108190	22 bp downstream
Tssr108191	transcription start site region 108191	179 bp downstream
Tssr108192	transcription start site region 108192	198 bp downstream
Tssr108193	transcription start site region 108193	215 bp downstream
Tssr108194	transcription start site region 108194	245 bp downstream