rs223557520 SNP Detail

Summary

• ID
  rs223557520
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:52226831 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTTGAG ACAGGAGGTG
  TGGGCTTGGA ATACAGCCGC CATATATTTA GCATTTTGTG GTGATTTCAT TCCCAAAAAG
  TGCAAGAACA TCATGAGACA GAAGAGTAAC TGGAGCATTT TGACAACCGC TAATTTTCCA
  GGTGATCTAA GTTAGCATTA ATGACAGTGA GGGACCCAGT GATAGGAAGA GTAGCTACAT
  Y
  GGGTATTATG TGACAAGAAT ATCATTTTAG CCTATGTGGT TTTCTTCATC ACATAGCATT
  ACTCTAGGGG CAATATCATC ACTAGACAAA TTTCCAATCA GAGAATATTA TACCAACCAC
  TTGTCCAGTA ACACTCAAAA TGACACAGAT GCTAAAAAAA AACAAAACAA AACAAACAAA
  CAAACAAAAA CATTTGAGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325178521	CHEV_16_52406581	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223557520					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:52226831 () rs orientation: forward

Symbol	Name	Function Class
Alcam	activated leukocyte cell adhesion molecule	within coordinates
Tssr141455	transcription start site region 141455	256 bp downstream
Tssr141456	transcription start site region 141456	1128 bp downstream
Tssr141457	transcription start site region 141457	1155 bp downstream
Tssr141458	transcription start site region 141458	1209 bp downstream
Tssr141459	transcription start site region 141459	1232 bp downstream
Tssr141460	transcription start site region 141460	1266 bp downstream
Tssr141461	transcription start site region 141461	1290 bp downstream
Tssr141462	transcription start site region 141462	1344 bp downstream