rs223557874 SNP Detail

Summary

• ID
  rs223557874
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:41493105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAACTGGA CATTTCTGAG
  CTTATTCATA TTATTTTCCA ATTTGGTAAA TGATTTTACC CAAAGCTACA AAGTTTCCTT
  TGATACAACA GACATTTATA TGTTCAGGTA TATATGTGTG TGTTGCATAT ACAGGGCTGT
  ATGGAGACAG AAATGAATCT AAATTTTGTG AAGGGGAGAG GTGTAGGGAG CCAGGATGTA
  R
  TCACACTGGA CCACCTGTTT GCTGCATTTT ACTCACGAGT CTGCAACCGA AATTGCCTGT
  CATTTTTATT TTATTTTTGC TTTGTTTTGT CTCAAGAAAG AATGAAGGAA TCGTGTTGCG
  CTCCCCTCAG TCCCTGAGAC CCTAACTTGT GATGTTTACC GTTTAAATCC ACGGGTTAGG
  CTCTTGGGAG CTGCGGGTCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377342629	MGP_WTSI_9_41389892	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223557874					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377342629	MGP_WTSI_9_41389892	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:41493105 () rs orientation: forward

Symbol	Name	Function Class
Gm28119	predicted gene 28119	99 bp upstream
Gm69589	predicted gene, 69589	within coordinates
Mir100hg	Mir100 Mirlet7a-2 Mir125b-1 cluster host gene	within coordinates
Mir125b-1	microRNA 125b-1	117 bp upstream
Tssr84514	transcription start site region 84514	1917 bp downstream
Tssr84515	transcription start site region 84515	1842 bp downstream
Tssr84516	transcription start site region 84516	1818 bp downstream
Tssr84517	transcription start site region 84517	1792 bp downstream
Tssr84518	transcription start site region 84518	1092 bp downstream
Tssr84519	transcription start site region 84519	1057 bp downstream
Tssr84520	transcription start site region 84520	887 bp downstream
Tssr84521	transcription start site region 84521	842 bp downstream
Tssr84522	transcription start site region 84522	805 bp downstream
Tssr84523	transcription start site region 84523	709 bp downstream
Tssr84524	transcription start site region 84524	549 bp downstream
Tssr84525	transcription start site region 84525	493 bp downstream
Tssr84526	transcription start site region 84526	458 bp downstream
Tssr84527	transcription start site region 84527	191 bp upstream
Tssr84528	transcription start site region 84528	1215 bp upstream
Tssr88997	transcription start site region 88997	1001 bp upstream