rs223560676 SNP Detail

Summary

• ID
  rs223560676
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:35885550 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCCATGAAA CACAGTGATA
  CCCTGAAGGC TTCTCTCAGG GAAAATGGGC TTCACGTGAT TCTATGGACT AAAGAGACAG
  GCACTGTGCC TGACGCAAGA AGTTTCATGA AATCAACAAC GTGTCATATA AAGGCGGCAG
  CACTGTACAG CATCTTCCTC AGTCTTGACC TTTAACCTCA TCCCAGAGGG TGAGCCCTAT
  Y
  CCACCCCTAT CACGGGTGTA CAACCCAAGG TTTGGGCCAG CCAGGGTCAT AGCAGCAGGG
  ACTGTAAGTC AGGTGGTGGG AGTCTCATCC CTCAACCTGA ACACAATTAA CTTGGATTCT
  TGCCCCACCT GCAAGTGGCT ATTCTTCATC CTAGGGTGAG GAAGGCAGAG AGGACAAGGA
  GCGAAAGGAG GCTCTGGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss364526932	MGP_WTSI_5_36070855	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223560676					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss364526932	MGP_WTSI_5_36070855	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:35885550 () rs orientation: forward

Symbol	Name	Function Class
Rr609994	regulatory region 609994	562 bp distal
Rr609995	regulatory region 609995	330 bp proximal
Rr609996	regulatory region 609996	1060 bp proximal
Sh3tc1	SH3 domain and tetratricopeptide repeats 1	within coordinates
Tssr45957	transcription start site region 45957	202 bp upstream
Tssr50711	transcription start site region 50711	801 bp downstream
Tssr50712	transcription start site region 50712	816 bp downstream
Tssr50713	transcription start site region 50713	842 bp downstream
Tssr50714	transcription start site region 50714	882 bp downstream
Tssr50715	transcription start site region 50715	1054 bp downstream
Tssr50716	transcription start site region 50716	1084 bp downstream