rs223561761 SNP Detail

Summary

• ID
  rs223561761
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:69816692 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAGAGTT CTGAGAAGAC
  TGGCTAGGGT GAGGAAATGC TGACGGGGTT GAGTTAGACG AGCTCAGCCT TCAAGGCTCT
  AGTTAAGTAT CCTTTCCTGA AGAGTTCTCC CAACTGTGTC TGTACCCCTG TGTCAGAATC
  CCAGATAGCT CAGATAGCTC TCTCTGACAG TATTAAGTAG TTAGTAATGG CTACTGTGTA
  M
  TCAGTAACTA TTTTCACTTA GCCATTTAGT GTTCTCTGGT TTTATGGATA TCTATAGATA
  GAATAATCTA GTTCTCTCTC TCTCTCTTTC CCTCTCTCTC TCTCTCTGCA ACAGGGTCTC
  TCTATTATGC AGCTCTGTCT TTCCTGAACT CCCTATGCAG AATAGGCTGG ACTCCAACTC
  AGGGAGATCC ATCTGCCTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324085542	CHEV_12_70870905	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223561761					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:69816692 () rs orientation: forward

Symbol	Name	Function Class
Cdkl1	cyclin dependent kinase like 1	within coordinates
Tssr116525	transcription start site region 116525	611 bp upstream
Tssr116526	transcription start site region 116526	176 bp upstream