rs223561897 SNP Detail

Summary

• ID
  rs223561897
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:72324527 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGTTTTGAA TTAATTATTA
  TTATTAATTT TTTTTTGAGA CAAGGTCTCT CTCTCTATAG CCCTGGCTGT CCTGGAACTC
  ACTATGTAGA TCAGGTTGGC CTGGAACTTA AGAGATTCCC CCTGCCTCTG CCTACTGAAT
  GCTGGGATTA AAGGCATGGG ATACCATGCC CTGCCCTTCT GTTTGTTCAT TTAAAAATTA
  M
  CATTACATAT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGA GAAGACGAAT
  TGCAGGAGTC AGTTCTCTTC TTGTACCGTA TGGGTGCCAC CAGGGATTGA ACCCCATCAT
  CAAGCGCAGC AGCAGCAGCC TTGCCCTCTT AGCTCTTTTC TGTTTATCTC TTTCCTTATG
  TCGGACTATG CTAGGTCATT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss350073131	MGP_WTSI_1_72331942	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223561897					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss350073131	MGP_WTSI_1_72331942	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:72324527 () rs orientation: forward

Symbol	Name	Function Class
Cpgi355	CpG island 355	875 bp distal
Gm51631	predicted gene, 51631	1450 bp downstream
Pecr	peroxisomal trans-2-enoyl-CoA reductase	1054 bp upstream
Rr412795	regulatory region 412795	989 bp distal
Rr412796	regulatory region 412796	374 bp distal
Rr412797	regulatory region 412797	1157 bp proximal
Tmem169	transmembrane protein 169	within coordinates
Tssr114	transcription start site region 114	1089 bp upstream
Tssr115	transcription start site region 115	1075 bp upstream
Tssr116	transcription start site region 116	1055 bp upstream
Tssr7298	transcription start site region 7298	949 bp downstream
Tssr12164	transcription start site region 12164	1140 bp upstream
Tssr12165	transcription start site region 12165	1102 bp upstream