rs223564877 SNP Detail

Summary

• ID
  rs223564877
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:148895783 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAGGAATAA GTGCTCCAAA
  CACCCCAGTA CAACTAAACG CAGAGACGGA AATAAGAGTA GACCAGGGAG GCTACAACTT
  TGTGATTTTC CTAGAACAAA TTAACATGTG GACTTTAAAG CTACCTCTGT GTATTTGGAT
  TAAAAATAAA TAAACATAGA AACAGTGAAA CGAAACTCTT CTGCTCCTGG CCGCACAGGA
  K
  AGTAATATTC AGGCTGTGGA AATCAAAGAG ATTTCTCCAC CAGGCTGATG CCTGACAGGT
  CCTTCTGTCC TCTCAGGAGG TTGTAAGAAG CCAGGCTGCC GGGACAATGC ATGTCACCTC
  AGCCTCTGTC TTGGCACCAG GGGCAGCCTG ACTTCTGCCT CTCAGATGAC ATACCGCTAT
  GCACTTGGGG GAAAGTCGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321719774	CHEV_5_149770549	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223564877					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:148895783 () rs orientation: forward

Symbol	Name	Function Class
1810059H22Rik	RIKEN cDNA 1810059H22 gene	within coordinates
Cpgi17084	CpG island 17084	174 bp proximal
Gm15406	predicted gene 15406	within coordinates
Gm15409	predicted gene 15409	within coordinates
Gm52833	predicted gene, 52833	409 bp downstream
Rr111639	regulatory region 111639	183 bp distal
Rr124806	regulatory region 124806	within coordinates
Rr378799	regulatory region 378799	821 bp downstream
Rr378800	regulatory region 378800	414 bp upstream
Tssr49867	transcription start site region 49867	290 bp upstream
Tssr49868	transcription start site region 49868	346 bp upstream
Tssr49869	transcription start site region 49869	818 bp upstream
Tssr54596	transcription start site region 54596	307 bp downstream
Tssr54597	transcription start site region 54597	481 bp downstream
Tssr54598	transcription start site region 54598	586 bp downstream
Tssr54599	transcription start site region 54599	1002 bp downstream