rs223565527 SNP Detail

Summary

• ID
  rs223565527
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:34849825 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGACGAAA AAAAGCAAAG
  TGAGAGGAAA TTTATTTGGC TTACAATTCC AGGTTCAATT CCATCATTGA TGGGGTGTGT
  TGGGGAGTCA AGGTAAGACT CTAAACAGCT AGTCAAATCA CATCCACAGT TAGGGACAGA
  GGGAAACAAA TGCATGGATA CTTGCTCCTT TGCACGCAGC TTAGTTTCTC CACTCTTACA
  Y
  AATTTACAAC CCCCTGCCTA GGGAATGGTG CCATCCACAG TGGGCTGGAT GTTCCCACAT
  CAATTAACTC AATTATGACA ATCTCCCACT TTGTGCCCAC AGGCCAACCC AATGTAGACA
  ATCTCTCATT GAGACTCCCT TCCCAGGTCA TGCCAAGTTG ACCATTATAG CTAGCTGGCA
  CAGTAGGCAA AGGTGTGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353605781	MGP_WTSI_2_34815333	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223565527					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353605781	MGP_WTSI_2_34815333	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:34849825 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi11563	CpG island 11563			1546 bp proximal
Gm52552	predicted gene, 52552			within coordinates
Gm74856	predicted gene, 74856			1178 bp downstream
Rr396906	regulatory region 396906			1429 bp downstream
Rr555565	regulatory region 555565			1516 bp distal
Rr555566	regulatory region 555566			1334 bp distal
Rr555567	regulatory region 555567			742 bp distal
Rr555568	regulatory region 555568			681 bp proximal
Rr555569	regulatory region 555569			1712 bp proximal
Rr555570	regulatory region 555570			1762 bp proximal
Traf1	TNF receptor-associated factor 1			Intron
				Noncoding-Transcript-Variant
Tssr476	transcription start site region 476			1496 bp downstream
Tssr17437	transcription start site region 17437			1478 bp downstream
Tssr17438	transcription start site region 17438			1458 bp downstream
Tssr17439	transcription start site region 17439			944 bp downstream
Tssr17440	transcription start site region 17440			1189 bp upstream
Tssr17441	transcription start site region 17441			1588 bp upstream
Tssr17442	transcription start site region 17442			1870 bp upstream
Tssr17443	transcription start site region 17443			1889 bp upstream
Tssr17444	transcription start site region 17444			1906 bp upstream
Tssr23667	transcription start site region 23667			1725 bp upstream
Tssr23668	transcription start site region 23668			1700 bp upstream
Tssr23669	transcription start site region 23669			1672 bp upstream
Tssr23670	transcription start site region 23670			1640 bp upstream
Tssr23671	transcription start site region 23671			1181 bp upstream
Tssr23672	transcription start site region 23672			1070 bp upstream
Tssr23673	transcription start site region 23673			1742 bp downstream
Tssr23674	transcription start site region 23674			1938 bp downstream
Tssr23675	transcription start site region 23675			1976 bp downstream
Tssr23676	transcription start site region 23676			1989 bp downstream