rs223566692 SNP Detail

Summary

• ID
  rs223566692
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:40905940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCGAAGAGAA GTCAAAAAGA
  AAAAAGTTAG AATGGAAATG CTGAGTAAAA CTCTCCTTTT TCTTTTTTTT TCTTTTTTTA
  ATAAAACTGC ACTAAAATAA CTGAACTTTT CTGTGGGAAT TGCGGCTGTT TTGTTGGCAA
  GTTTTCGCTG GTCTGGGGAG AGTTGGTGGA ACAGCCGAAG TTTGAGCATG TTTATGGGGT
  Y
  GTGAGGGTCA AATGCGGTGA AGGGATCCTG TACAATTGTG ATTGTTTTAT CTCTCCTGTA
  GGGGGAGATA AATGTTGAAC CAATTTAGTT TCTTAGGTTT TGCACGCAGA ACCAATTTAG
  TTTCTTAGGT TTTGCACGCA GAAATGCTCA CTAACTTATT TGCTTTTGTT ATTTTGCTTG
  CTTTTTGAAA CACTATCTAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357671150	MGP_WTSI_3_40755427	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223566692					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357671150	MGP_WTSI_3_40755427	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:40905940 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13115	CpG island 13115	300 bp distal
Gm64655	predicted gene, 64655	1980 bp upstream
Larp1b	La ribonucleoprotein 1B	Intron
Rr397652	regulatory region 397652	1692 bp downstream
Rr575871	regulatory region 575871	1991 bp distal
Rr575872	regulatory region 575872	1667 bp distal
Rr575873	regulatory region 575873	1430 bp distal
Rr575874	regulatory region 575874	703 bp distal
Rr575875	regulatory region 575875	within coordinates
Rr575876	regulatory region 575876	51 bp proximal
Tssr28976	transcription start site region 28976	1691 bp downstream
Tssr28977	transcription start site region 28977	1653 bp downstream
Tssr28978	transcription start site region 28978	1565 bp downstream
Tssr28979	transcription start site region 28979	1549 bp downstream
Tssr28980	transcription start site region 28980	1537 bp downstream
Tssr28981	transcription start site region 28981	1087 bp downstream
Tssr28982	transcription start site region 28982	848 bp downstream
Tssr28983	transcription start site region 28983	667 bp downstream