rs223566822 SNP Detail

Summary

• ID
  rs223566822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:39834597 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTAGTTCCA ACCATGCCAT
  GAATGTTAAG TGAGTCCTGA TAATTCTGAA TTCACTCTGG GCAATAGGTG GTGCTGTTGT
  ATGGTTCTTT AAGCTAAGAT TTAAGTTTGG GGAAATTCTG TGTGTTGTGT AGTAAATCAA
  ATCTCCCTAT TCAGAAATGT GAAAAGCGCT CTCGGAAAGA TAAACGAGAA CATTTATGTT
  Y
  CTCAATTAGT GGAACAAAAT TAAGCTTTGG ATCTTCTTGC CCATGTTGTG AGCTCATGTG
  TAGGTTTAGT AAAATACAAT GTTATATCTA ATTTCTCCTT GAGTTTTACT ACTATCCAAA
  GAGCGGTGAA GCTGAGTGTG GCGGCATGAA TTTATAATCC CAGCACTCAG AAGGCTGAGG
  TGGGTGGTTC TCTATGAATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss380111691	MGP_WTSI_10_39678407	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223566822					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	T	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss380111691	MGP_WTSI_10_39678407	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:39834597 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1451	CpG island 1451	1086 bp proximal
Mfsd4b3-ps	major facilitator superfamily domain containing 4B3, pseudogene	within coordinates
Mfsd4b5	major facilitator superfamily domain containing 4B5	mRNA-UTR
Rr401837	regulatory region 401837	1569 bp upstream
Rr430094	regulatory region 430094	33 bp distal
Rr430095	regulatory region 430095	123 bp distal
Rr430096	regulatory region 430096	984 bp proximal
Rr430097	regulatory region 430097	1381 bp proximal
Rr430098	regulatory region 430098	1538 bp proximal
Rr430099	regulatory region 430099	1573 bp proximal
Tssr97348	transcription start site region 97348	1543 bp downstream
Tssr97349	transcription start site region 97349	1571 bp downstream
Tssr97350	transcription start site region 97350	1594 bp downstream
Tssr97351	transcription start site region 97351	1642 bp downstream