rs223572010 SNP Detail

Summary

• ID
  rs223572010
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:54816832 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGTTCAGT GTCAGTCAGG
  GCTACGGGGC GTCCCCAAAC CACACCAAAA GGACAAGGAA ACTGACCTCT TTGTCTAAGT
  TGTATTTTAA CTCAGAATTG ATTTCTCTAG ATAGCCAGTC TGTCCCTGGT CAAGACTACA
  GCTTTTCTCT GATCTCTAAA TTTTCCTCTG AGGCTAAAAA CATCAGTAAC GAAGTAACCT
  R
  TCAGGTTGCA ACCCATTGTG GGCAGCTTTT TCACAACTAG CATGAGGGTC CTGCCCAACC
  CCCACCCCTA CCCCCTGATG CAAGGATGAT TGAGGGTCTT CCAGGGATGT CTGAGGTCTC
  AGCACACCTC TAATATTTAG AAGTTTTGAC TTTGGGGGTG AAGAGGAAAG TGACCCTGTT
  ATTTAGTTTT TTGAGATGGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391139437	MGP_WTSI_14_55198212	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223572010					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391139437	MGP_WTSI_14_55198212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:54816832 () rs orientation: forward

Symbol	Name	Function Class
Ajuba	ajuba LIM protein	1817 bp upstream
Cpgi6463	CpG island 6463	1629 bp distal
Gm63340	predicted gene, 63340	within coordinates
Rnu6-ps1	U6 small nuclear RNA, pseudogene 1	1802 bp upstream
Rr389677	regulatory region 389677	1293 bp downstream
Rr404101	regulatory region 404101	919 bp downstream
Tssr128602	transcription start site region 128602	1877 bp upstream
Tssr128603	transcription start site region 128603	1836 bp upstream
Tssr128604	transcription start site region 128604	1817 bp upstream
Tssr128605	transcription start site region 128605	1798 bp upstream
Tssr128606	transcription start site region 128606	1763 bp upstream