rs223572109 SNP Detail

Summary

• ID
  rs223572109
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:25111467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCACAGAG TACCTCACCC
  ACAGGAGAAA GGTACATGGA TAGAGATGAT CTTGCTTCTG TGTGGTGGCT CTGTGAAGAG
  CTGGGAAACA CTGGCTGTGG TGAAGACTAG AACAGATTCA GAACCTCTAC CGAGTCTGCT
  TCAAAAGGGA CAGACCATTC AACCAAGCCC GGGATGACTA AAATGTCTGC ATGACTACTG
  Y
  CTGCTAATAG GACTGACCTG GTTTGTATCA TCACGAGCTT ACTTGGCATA CTCTAAAGTT
  ATAGGACTCC TCATTTCTTT GCCTTCCACC ACAAGCCTCC CACCCCCAGT TGAGCCCTGA
  GAAAATCTGT GACTTTTCCA GGAGAGGTTG GGAAGGTCTG GGAAGTGGAT CTTGGCTGGG
  CTGTGTGTAC ACTTGTGTGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370805203	MGP_WTSI_7_26197061	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223572109					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370805203	MGP_WTSI_7_26197061	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:25111467 () rs orientation: forward

Symbol	Name	Function Class
4732471J01Rik	RIKEN cDNA 4732471J01 gene	within coordinates
Cxcl17	C-X-C motif chemokine ligand 17	within coordinates
Rr160903	regulatory region 160903	666 bp distal
Rr164493	regulatory region 164493	1663 bp proximal
Rr170192	regulatory region 170192	within coordinates
Rr170193	regulatory region 170193	535 bp proximal
Tssr2143	transcription start site region 2143	755 bp downstream
Tssr2144	transcription start site region 2144	905 bp downstream
Tssr2145	transcription start site region 2145	923 bp downstream
Tssr2146	transcription start site region 2146	941 bp downstream
Tssr2147	transcription start site region 2147	984 bp downstream
Tssr71243	transcription start site region 71243	765 bp downstream
Tssr71244	transcription start site region 71244	790 bp downstream
Tssr71245	transcription start site region 71245	803 bp downstream
Tssr71246	transcription start site region 71246	815 bp downstream
Tssr71247	transcription start site region 71247	860 bp downstream