rs223574439 SNP Detail

Summary

• ID
  rs223574439
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:71149592 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTCAGTC GTTTGGCGGG
  GGGCGGGGGA GGGGGTGCTG GCTGGGATAT GGCTCGCGAA GCGCAAACCC CACGTGTGTG
  GTGAGGGGAG AGTCCACTCT ATCTTTCTGG ATGGTCACTT GCCTACAAAA GGGGATAAAA
  CCTGGGTGTG TGGCTCTCTG AGGCAACAAC TGGTCAAGGC TCGGGCGGGG GTTTGGGGGG
  R
  GGGGGGAGAA CCCTCTGAGG CCTCAATGGC CTGGGCGAAG GTCCTGAGGT GCAAAGGAGC
  TCCAATGGGG TACAGATTGG AGAGGAGTCA CAGAGAAGGG ATGAGACTCC TCTCTGGTCT
  TCTAAGGGTT GTGTTGAGTG TGCTGGGACT TGTTGCTCCC ACCTCTTCCA CCTCCGTTCC
  CAGCAAGCAG AAAAGCCTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322701103	CHEV_8_73220841	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223574439					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:71149592 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20485	CpG island 20485	1262 bp distal
Cpgi20486	CpG island 20486	within coordinates
Gm64347	predicted gene, 64347	within coordinates
Gm64349	predicted gene, 64349	1551 bp upstream
Rr368548	regulatory region 368548	1213 bp downstream
Rr368549	regulatory region 368549	1354 bp upstream
Rr368550	regulatory region 368550	1717 bp upstream
Rr400910	regulatory region 400910	1362 bp downstream
Rr664888	regulatory region 664888	within coordinates
Rr664889	regulatory region 664889	1061 bp proximal
Rr664890	regulatory region 664890	1562 bp proximal
Rr664891	regulatory region 664891	1716 bp proximal
Rr664892	regulatory region 664892	1861 bp proximal
Tssr77799	transcription start site region 77799	1584 bp upstream
Tssr77800	transcription start site region 77800	1989 bp upstream
Tssr81647	transcription start site region 81647	1375 bp downstream
Tssr81648	transcription start site region 81648	1392 bp downstream