rs223579965 SNP Detail

Summary

• ID
  rs223579965
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:5746163 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGGACACA GAGTGACTAC
  AAGTCTTTCA AAATTTATTG TTTGATGGGT GTCTTAGTTA GGGTTTTACT GCTGTGAACA
  GACACCATGA CTAAGGCAAG ACTTATAAAG GACAGCATTT AATTGGGGCT GGCTCTCAGG
  TTCAGCGGTT CAGTCCATTA TCATCAAGGT GGGAGCAGGG GAGCATCTAG GCAGGCATGG
  Y
  GCAGGAGGAG CTGAGAGTTC TACATCTTCA TCTGAAGGCT TCTGACAGAA CACGAACTTC
  TAGGCAGCTA GGATGAGGGT CTTAAGCCCA TGCCCACAGT GACACACCTA CTCCAACAAG
  GCCACACCTC CCTGATAGAG CCACTCCCTA GGCCAAGCAT TTACAAACCA TCACTGTGGG
  TGAAGACATT TTATTAAATA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss363869401	MGP_WTSI_5_5696163	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223579965					SNP	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss363869401	MGP_WTSI_5_5696163	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:5746163 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15524	CpG island 15524	1457 bp distal
Gm40262	predicted gene, 40262	within coordinates
Gm43219	predicted gene 43219	695 bp upstream
Rr607035	regulatory region 607035	1606 bp distal
Rr607036	regulatory region 607036	1383 bp distal
Steap2	six transmembrane epithelial antigen of prostate 2	1585 bp upstream
Tssr50065	transcription start site region 50065	1851 bp upstream
Tssr50066	transcription start site region 50066	1716 bp upstream
Tssr50067	transcription start site region 50067	1672 bp upstream
Tssr50068	transcription start site region 50068	1624 bp upstream
Tssr50069	transcription start site region 50069	1582 bp upstream