rs223586027 SNP Detail

Summary

• ID
  rs223586027
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124791570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTCATTAC AGATGGTTGT
  GAGCTACCAT GTGGTTGCTG GGATTTGAAC TCAGGACCTT CGGAAGATCA GTCAGTGCTC
  TTAACCACTG TGCCATCTCT CCAGCTCCGA AAAACATTAA AAAAAAAAAA GACATTTATC
  ATTAACTTCT TTTAAATTTA AAAGATTTTT ATACATGTAT TCAATGATTT TTTTTTTGTT
  K
  TTTTTGTTTT TTTTTTGTTT TTCCAGACAG GGTTTCTCTG TATAGCCCTG GCTGTCCTGG
  AACTCACTTT GTAGACCAGG CTGGCCTCGA ACTCAGAGAT CCACCTGCCT CTGCCTCCCG
  AGTGCTGGGA TTAAAGGCGT GCGCCACCAC GCCCGGCTCC TCGATGTTAT TTTTATCATC
  CAGTGCCTGT ATACCCTTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss376356889	MGP_WTSI_8_126588731	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs223586027					SNP	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	T	G	G	T	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376356889	MGP_WTSI_8_126588731	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124791570 () rs orientation: forward

Symbol	Name	Function Class
Gm29897	predicted gene, 29897	within coordinates
Rr672611	regulatory region 672611	1731 bp proximal
Tssr80018	transcription start site region 80018	1946 bp upstream
Tssr80019	transcription start site region 80019	1958 bp upstream