rs223588225 SNP Detail

Summary

• ID
  rs223588225
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75545213 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGGATTCCC CTCATTCCAG
  CCGCTTGACG CGGCGGGGCG GGACGGGGCG GGGCAGGGCG GGCACTGCGG CCTCGAAGCC
  CCTCCCCTTT CAGTGCGCTC CTCCCACCAA GACTCCTCTG GCTGGAGAGG GAGCTCAATG
  AGGCCGCGGT AGGGGGAGGG GAGCGAGCCC ATGCTAGTGC TGGGGACTCC AAGCTCTCCC
  R
  CCTCAGGTCT TCTAATGCTC TGGGGTGGAC TGAAGGTCGT ATCCTCTCTA TGCTTTTAAA
  CCTGGGGGCA TCGTAAAGGG CGCTCCCCTT TGCCCTGTCT TTCACCCATC TTCCACCTGC
  AGCACCCATT CCCCTGGCCC GCTCCAAAGG GCTTCGTTCC CCAGCTGGCG CCGCACACCA
  CCCCCACCCC CGGGTTGTGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383902892	MGP_WTSI_11_75467889	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223588225					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383902892	MGP_WTSI_11_75467889	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75545213 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3272	CpG island 3272	within coordinates
Cpgi3273	CpG island 3273	1086 bp proximal
Gm71962	predicted gene, 71962	584 bp upstream
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	188 bp upstream
Rr451240	regulatory region 451240	1512 bp distal
Rr451243	regulatory region 451243	1926 bp distal
Rr451244	regulatory region 451244	595 bp distal
Rr451245	regulatory region 451245	950 bp distal
Rr451246	regulatory region 451246	94 bp distal
Rr451247	regulatory region 451247	996 bp proximal
Rr451248	regulatory region 451248	1497 bp proximal
Tssr103026	transcription start site region 103026	1364 bp upstream
Tssr103027	transcription start site region 103027	1458 bp upstream
Tssr103028	transcription start site region 103028	1524 bp upstream
Tssr103029	transcription start site region 103029	1541 bp upstream
Tssr103030	transcription start site region 103030	1592 bp upstream
Tssr103031	transcription start site region 103031	1616 bp upstream
Tssr103032	transcription start site region 103032	1716 bp upstream