rs223589021 SNP Detail

Summary

• ID
  rs223589021
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171975564 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATTAGAAC CTCAGGCCTG
  GAGGACACCT AGAAGTTTGC CTGCCAGAGC CTTTGGAATG AGGTTCATTT TCCGGCACAA
  CTCCAAGGAG CCCCTAGATC GCATGTGTTT TGAATACCAG GAGACAAGCC ATCACTCTCA
  AAGTACGAAA ACAACTTGAC TCCTCCGCCC CGCGCACGCG CCCCTCGCGG CTTCGGTTGG
  Y
  CCGAGGCTCC GCCCCTTGTG CGGCCACCGG GAGGGTTGGG AGCCCAGAGC TCGCGGGACC
  GCTCTCGCTC AGTCTCCTCC AGCACAGCGT CGCAAACCCC GCCGGAAAGC GTGACGGCGC
  AGGCGCAGGC GCGGAGACCC GAGACGGTGG TGGTGGCTGC CGCTGGCCAG TGTAAGATGG
  CGGCGGCGTT GGTGGCGGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352399901	MGP_WTSI_1_174078128	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223589021					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352399901	MGP_WTSI_1_174078128	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171975564 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1037	CpG island 1037	within coordinates
Dcaf8	DDB1 and CUL4 associated factor 8	10 bp upstream
Gm70088	predicted gene, 70088	10 bp upstream
Rr372457	regulatory region 372457	within coordinates
Rr423469	regulatory region 423469	21 bp distal
Rr423470	regulatory region 423470	within coordinates
Rr423471	regulatory region 423471	192 bp proximal
Rr423472	regulatory region 423472	1969 bp proximal
Tssr10170	transcription start site region 10170	40 bp upstream
Tssr10171	transcription start site region 10171	61 bp upstream
Tssr10172	transcription start site region 10172	101 bp upstream
Tssr10173	transcription start site region 10173	113 bp upstream
Tssr15148	transcription start site region 15148	32 bp upstream