rs223589749 SNP Detail

Summary

• ID
  rs223589749
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:87341807 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ttgtcaaat cagcttgtct gccactcagt
  tcgacaccac tttcaaacat gggtgtttct ttctgcaaac taactttaca ttcattgttt
  gggattaaag gtgtgtgtac taagggtgtg tttacattcc agccagaggg attaaaggtg
  Y
  aatctaaggg ctaagccata ccacaactag aaacagtttt ttcagtaaat aacacaatct
  tggggttcac agtgtgacca catatcctgc aacaGACATG CTCAGACCTA CCTGCTTCTC
  TATCATATTT GTAACTGTCT CTATAGCTGC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319829379	CHEV_1_89310660	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223589749					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87341807 () rs orientation: forward

Symbol	Name	Function Class
Gigyf2	GRB10 interacting GYF protein 2	within coordinates
Gm55682	predicted gene, 55682	1170 bp downstream