rs223592392 SNP Detail

Summary

• ID
  rs223592392
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:10107514 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCGTCAAT CCCAAAGATA
  CATGGATTTG GCTGGGGAAA ATGCTTCTAA GCTCTCTCTT ATAATTCCTG GTTTACATGA
  ATTGTAGTAG TATTGTAGGG AACTGCTAAG AGGATTTGGT ATGTGTCTAA AGAGCTGAAA
  AAAAACCAAA CCAATCAATC CAAGAGCTCA TGGATTTTTT TTTTTTTTTT AAATCAATGC
  Y
  CTGCTCATTC GATTTATAAA AACAGCCACG CTCTTCAGTT TGGGAATCTA CTGAAGGCTG
  CAACTAACTG CATGTAGCCA CCAGGTTCAA GGCAGAGTGT GTGAGATTTA CAAAAATAAT
  CATGTTGACA AAAGTCGCAC CCCAAGTCAG CCCTTTACAC GCCCTGAAGG CAAGAAACTT
  TCTAAAAGGG GAATCGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss348594577	MGP_WTSI_1_10027370	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223592392					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss348594577	MGP_WTSI_1_10027370	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:10107514 () rs orientation: forward

Symbol	Name	Function Class
Cops5	COP9 signalosome subunit 5	within coordinates
Cpgi31	CpG island 31	266 bp proximal
Cspp1	centrosome and spindle pole associated protein 1	698 bp upstream
Rr407692	regulatory region 407692	606 bp proximal
Rr407693	regulatory region 407693	828 bp proximal
Rr407694	regulatory region 407694	984 bp proximal
Rr407695	regulatory region 407695	1994 bp proximal
Tssr4	transcription start site region 4	919 bp upstream
Tssr10955	transcription start site region 10955	594 bp downstream
Tssr10956	transcription start site region 10956	633 bp downstream
Tssr10957	transcription start site region 10957	643 bp downstream
Tssr10958	transcription start site region 10958	817 bp downstream