rs223592729 SNP Detail

Summary

• ID
  rs223592729
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42174384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTAAGATAAT TAGGCATTAT
  TGCTTGAAAT GTAAGTTTAC GTTAAATAGT ATACTGCTTT GGCAGAAAAA AAACCCACAA
  TTTTTGACTT TAAAACATGG TTATCAATTA AATGGGCCTG GGGTATAATT CAGGGATATT
  CCTTTGGTGT AGTATGTCCA AAGCCTTGGT TCCTATCCCA GCATCAGATA AATAAGTAAA
  Y
  ATATATAAAT CCACTATTAT ACTTAAATGA CTTAAAACTA TTATATTTTT CTTAACTGAA
  AAAAGTACAG GAACAATAAC TAGCCATTTA TATATTTAAA AAATACTACA TATTATTTTA
  AGCACTCCAC CCCTCCCCCC TTTGGCTATG TGGCCTGGAA CTTGCATTCT CCTGCTTCAG
  TCTCCAAAGC TCTTGGATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377361032	MGP_WTSI_9_42071171	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223592729					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377361032	MGP_WTSI_9_42071171	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42174384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	566 bp proximal
Gm10690	predicted gene 10690	1270 bp upstream
Rr368719	regulatory region 368719	1415 bp upstream
Rr401326	regulatory region 401326	1105 bp upstream
Rr677189	regulatory region 677189	507 bp proximal
Rr677190	regulatory region 677190	1102 bp proximal
Rr677191	regulatory region 677191	1382 bp proximal
Sc5d	sterol-C5-desaturase	within coordinates
Tssr84545	transcription start site region 84545	1383 bp upstream
Tssr89017	transcription start site region 89017	947 bp upstream
Tssr89018	transcription start site region 89018	1116 bp downstream
Tssr89019	transcription start site region 89019	1138 bp downstream