rs223598931 SNP Detail

Summary

• ID
  rs223598931
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:36396152 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCGAGCCCGC AGCGCATCGA TGCGCCGCCG CCCGCGCCTC
  TCAAGCTCTG GCTGGCGCTC AGCCGCCACC GCTCGAGGGT CGCCCGCGTG AATTCCAGCC
  Y
  ACCCGCGCCC TCACCACCAG AGTAAGTGAG CCCACGTCGC CCTGTCGCCA CCGCAGCCTT
  CCAGCCGCCT CCTTCCCGGG GCACATCGGC CGAGTCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322166726	CHEV_7_37481746	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223598931					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:36396152 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18884	CpG island 18884	within coordinates
Gm36722	predicted gene, 36722	within coordinates
Gm38285	predicted gene, 38285	368 bp downstream
Gm72509	predicted gene, 72509	within coordinates
Rr645554	regulatory region 645554	816 bp distal
Rr645555	regulatory region 645555	75 bp distal
Rr645556	regulatory region 645556	901 bp proximal
Rr645557	regulatory region 645557	1402 bp proximal
Tshz3	teashirt zinc finger family member 3	1391 bp upstream
Tssr65916	transcription start site region 65916	49 bp downstream
Tssr65917	transcription start site region 65917	1275 bp upstream
Tssr65918	transcription start site region 65918	1485 bp upstream
Tssr72063	transcription start site region 72063	653 bp upstream