rs223599240 SNP Detail

Summary

• ID
  rs223599240
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:129471365 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCATCTGT CTGTCTTTCC
  ATCCATCCAT CCATCCTGTC ACCATGGACT GGGCCTCTGT GCTAGCCTTG TTGTCTGCAG
  TATAACAAAT GCCCAGTTAA CGAAAAAAGA AATGTTGTGA AATAAACATG TAAACGAAGA
  GGTGTTCCCT ATCTTGTGGG AGATCACATT TGCTAAGGTT GCAAAACAAA CATAGTCTTT
  R
  GTGGTAGATG CTATGCTAGG GAGATGTGAA CTGAATTGCT CAGAGGAGCT CTGGGTCCAG
  CCAGAGGTAT TGAGGACCAA GAAGTATCTT AGGGTAGAGC AGTGCTAGAG CAGAATTGTA
  CATGGTTCAC TGGGGTCTCT TATGTGGGAG AGGTGAGAGT GGGTGATCCA GGACAAGGAA
  AAGATATGGG AAGGGGGAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355643446	MGP_WTSI_2_129455181	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223599240					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355643446	MGP_WTSI_2_129455181	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:129471365 () rs orientation: forward

Symbol	Name	Function Class
Sirpa	signal-regulatory protein alpha	within coordinates
Tssr20162	transcription start site region 20162	536 bp upstream
Tssr20163	transcription start site region 20163	556 bp upstream
Tssr20164	transcription start site region 20164	617 bp upstream
Tssr20165	transcription start site region 20165	647 bp upstream
Tssr20166	transcription start site region 20166	666 bp upstream
Tssr20167	transcription start site region 20167	740 bp upstream
Tssr20168	transcription start site region 20168	866 bp upstream
Tssr20169	transcription start site region 20169	962 bp upstream
Tssr20170	transcription start site region 20170	1130 bp upstream
Tssr20171	transcription start site region 20171	1142 bp upstream
Tssr20172	transcription start site region 20172	1210 bp upstream
Tssr20173	transcription start site region 20173	1242 bp upstream
Tssr20174	transcription start site region 20174	1287 bp upstream
Tssr20175	transcription start site region 20175	1473 bp upstream
Tssr20176	transcription start site region 20176	1491 bp upstream
Tssr20177	transcription start site region 20177	1823 bp upstream
Tssr26273	transcription start site region 26273	537 bp downstream
Tssr26274	transcription start site region 26274	597 bp downstream
Tssr26275	transcription start site region 26275	1177 bp downstream