rs223600471 SNP Detail

Summary

• ID
  rs223600471
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:149977136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTACTGCTG AAGCCCACCC CAAACACAGT
  GCACTACATC CTGACCCACT TCAAGGGAGT CTGGAACATT GTGAACAACA TCCCCTTCCT
  GCGAAGTTTA ATCATGAAAT ATGTGCTGAC ATGTAAGTAC AACCCTCCCT TGTTTTCCAG
  Y
  ATCCTCCAAC ACAACTAGGC ACTAGAAACC CAACCCCAAG AACTATCCTG ACCTTTTCAA
  AGGGCTTGAA GTATACCTTT TCTAATCTGT TTTTCCCCTG AAATGTCTAA AATACAGTCA
  TGAAAACCTG TAGTCTCTAT TCTAGTTTTG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320045520	CHEV_1_151948515	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223600471					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:149977136 () rs orientation: forward

Symbol	Name	Function Class
Cpgi844	CpG island 844	1064 bp distal
Ptgs2	prostaglandin-endoperoxide synthase 2	within coordinates
Ptgs2os	prostaglandin-endoperoxide synthase 2, opposite strand	1511 bp upstream
Rr420121	regulatory region 420121	1579 bp distal
Rr420122	regulatory region 420122	1344 bp distal
Tssr242	transcription start site region 242	1415 bp upstream
Tssr9221	transcription start site region 9221	1628 bp downstream
Tssr9222	transcription start site region 9222	1279 bp downstream
Tssr9223	transcription start site region 9223	436 bp downstream
Tssr9224	transcription start site region 9224	328 bp downstream
Tssr9225	transcription start site region 9225	203 bp downstream
Tssr9226	transcription start site region 9226	190 bp downstream
Tssr9227	transcription start site region 9227	112 bp downstream
Tssr9228	transcription start site region 9228	72 bp downstream
Tssr9229	transcription start site region 9229	59 bp downstream
Tssr9230	transcription start site region 9230	592 bp upstream
Tssr9231	transcription start site region 9231	744 bp upstream
Tssr9232	transcription start site region 9232	784 bp upstream
Tssr9233	transcription start site region 9233	1257 bp upstream
Tssr9234	transcription start site region 9234	1261 bp upstream
Tssr9235	transcription start site region 9235	1301 bp upstream
Tssr9236	transcription start site region 9236	1338 bp upstream
Tssr9237	transcription start site region 9237	1357 bp upstream
Tssr9238	transcription start site region 9238	1386 bp upstream
Tssr9239	transcription start site region 9239	1427 bp upstream
Tssr9240	transcription start site region 9240	1449 bp upstream
Tssr9241	transcription start site region 9241	1475 bp upstream
Tssr9242	transcription start site region 9242	1495 bp upstream
Tssr9243	transcription start site region 9243	1619 bp upstream
Tssr9244	transcription start site region 9244	1664 bp upstream
Tssr9245	transcription start site region 9245	1684 bp upstream
Tssr9246	transcription start site region 9246	1721 bp upstream
Tssr9247	transcription start site region 9247	1860 bp upstream
Tssr14127	transcription start site region 14127	1830 bp upstream
Tssr14128	transcription start site region 14128	1775 bp upstream
Tssr14129	transcription start site region 14129	1700 bp upstream
Tssr14130	transcription start site region 14130	123 bp upstream
Tssr14131	transcription start site region 14131	67 bp upstream