rs223609704 SNP Detail

Summary

• ID
  rs223609704
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:27858829 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAGCC CCTATACCTC
  TTCTCTCCCA GTGCAGTATG GCAGCTGTAA CTGTCTGTAT ACCTGGATGT GAGTTTTGTA
  AGACAGGGTT GGAGACTGCC TGCCACATTC ACCTTGTCTC CTCTCCCTAA CAGCTGCCGA
  GTGTCCTGCC CACAGCCACT ACTCTATCTG TACACATTCC TGCCAGGGCT CCTGTGCTGC
  W
  ATCTCTGGCT TCACTGGCTG CACCACGCAG TGCTTTGAAG GGTGTGAGTG CGATGACCAC
  TTCCTGCTCT CCCAGGGTGT GTGCATTCCT GCCCAGGACT GTGGCTGCTT CTACAATGAC
  CAATATATGC CGGTGAGCGG AGGGGATGGG AGGCAGTCTC TAAACAGGCA GTGTGGGTAG
  AGGGACTGGA GGGACATTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370854535	MGP_WTSI_7_28944423	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223609704					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370854535	MGP_WTSI_7_28944423	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:27858829 () rs orientation: forward

Symbol	Name	Function Class
Fcgbpl1	Fc fragment of IgG binding protein like 1	within coordinates
Rr170293	regulatory region 170293	within coordinates
Rr380562	regulatory region 380562	1904 bp upstream
Tssr65426	transcription start site region 65426	1869 bp downstream
Tssr65427	transcription start site region 65427	1840 bp downstream
Tssr65428	transcription start site region 65428	1823 bp downstream
Tssr65429	transcription start site region 65429	1810 bp downstream
Tssr65430	transcription start site region 65430	1764 bp downstream
Tssr65431	transcription start site region 65431	1750 bp downstream
Tssr65432	transcription start site region 65432	1727 bp downstream
Tssr65433	transcription start site region 65433	1615 bp downstream
Tssr65434	transcription start site region 65434	1555 bp downstream
Tssr65435	transcription start site region 65435	1408 bp downstream
Tssr65436	transcription start site region 65436	22 bp upstream
Tssr65437	transcription start site region 65437	76 bp upstream
Tssr65438	transcription start site region 65438	1758 bp upstream