rs223616998 SNP Detail

Summary

• ID
  rs223616998
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:24598179 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAAACTGT GCTTCCTAGA
  GCATTTCCTG GAGGAGCGTG GAGGACATCC ATGGAACATC CCACAGGTTT ATCCCAGACT
  GCCTGATTTT CTTATATAAC AAGAGTTCAT GACTCCCATA CTTTTGTGTC TAGGTAAGGT
  GCAAAGCTAT GCTTTGTGGC AAAATGGAAT CCCAAGGAAG TGGGCGTGGG GGGGTACCCC
  S
  GTGGCAGGAA ATTCCCATGA TCTTTCTGAG ACCTCTAGAG AGAGAGAGGT TAAGTGTGGC
  TTTAGCTGGT ACCTCCCTCT GACATTACTC ACATATAGTA TATACTTGCT TAAGACTACC
  TCTACACACA TCCTTATCTC CTCAGCCCCA AACTCAAGCA AATTCTGGCT CATTGCTCTG
  TCTAGTTTCA CTCTGCTCAT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321495650	CHEV_5_23898999	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223616998					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:24598179 () rs orientation: forward

Symbol	Name	Function Class
Abcb8	ATP-binding cassette, sub-family B member 8	482 bp upstream
Atg9b	autophagy related 9B	1038 bp upstream
Cpgi15597	CpG island 15597	1055 bp proximal
Rr398998	regulatory region 398998	227 bp upstream
Rr398999	regulatory region 398999	988 bp upstream
Tssr45411	transcription start site region 45411	459 bp upstream
Tssr45412	transcription start site region 45412	1207 bp upstream
Tssr50315	transcription start site region 50315	1220 bp upstream
Tssr50316	transcription start site region 50316	1174 bp upstream
Tssr50317	transcription start site region 50317	1150 bp upstream
Tssr50318	transcription start site region 50318	687 bp upstream
Tssr50319	transcription start site region 50319	483 bp upstream