rs223617350 SNP Detail

Summary

• ID
  rs223617350
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:115902966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAATTCAAGG GGATGGGCCG
  GGGGGGGGGG GGGGGGAAGC TACATTTACA CAGGTCTACC TTTGCATAGG TCTAGGTCGG
  TGCTGTGGGC CCAATCAAAG TCAGAGGGCT AAATAACCTC CTTTTTTTTC TTTTTCCTTG
  TTTTAAGAAT CTTACAGCCC AAGCTGTCCT GGAACTCACT TTGTAGTTCA GGCTGATCTT
  R
  AACTCGTGGC AATTCTCATG CCTGAGCTTC CCCAGTACTG GACTATTAGG AATGCGCCAC
  CATGCCTAAT ACTCTCTTAT ATTGCTTCCT TGGTCCTCAC ATTTTTAAGA GGTTCATACT
  TCCAAGTTGT GGGCGATGCC CCCAGAAGGC GGGCTCGAGA AGACAAACCG CACAGCCCCC
  CTCCCCCCAG CTCTGGCTTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323864512	CHEV_11_115873454	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223617350					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:115902966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4157	CpG island 4157	105 bp proximal
Galk1	galactokinase 1	within coordinates
Gm73084	predicted gene, 73084	within coordinates
Rr369447	regulatory region 369447	68 bp upstream
Rr460121	regulatory region 460121	342 bp distal
Rr460122	regulatory region 460122	569 bp proximal
Tssr111809	transcription start site region 111809	538 bp downstream
Tssr111810	transcription start site region 111810	573 bp downstream