rs223624554 SNP Detail

Summary

• ID
  rs223624554
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:117582886 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGGGCTATA CAGAGAAACC
  CTGTCTCGAA AAACCAAAAA TAACCGTCTA AACAGGTAAG AGTGGATGGA CAACTAACTG
  TCGTCTACTG TAGATTTAAA CATATTTTGG CGTATTTGCC TCGAAAAACT TTAAACCACA
  GAATTTTTTA CCCACGAAGT TTTTTTTTTT TTTTAGTAAA ACCTAAGAAG CAAGTACATT
  Y
  ACCTGTATGC CCAAGATATT AATTGCACTT CTAAGAGGCA TATTATAGTA GCAAGCATGC
  AGTCCAGTTT CAAAGTTACA GAGCTGGAGA GGAAGTGAAA AATTATATAT TTTTGGTTTT
  GTTTTTCGAG GCCGAGAACT CATTCAGGCT AGACTCGATC TCAATATTCA CTTTTATTCA
  CACTGTTACA ATATGAGAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323499183	CHEV_10_117184037	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223624554					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:117582886 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2238	CpG island 2238	1196 bp distal
Cpgi2239	CpG island 2239	326 bp distal
Gm66856	predicted gene, 66856	within coordinates
Rr439610	regulatory region 439610	1018 bp distal
Rr439611	regulatory region 439611	490 bp distal
Rr439612	regulatory region 439612	140 bp distal
Slc35e3	solute carrier family 35, member E3	623 bp upstream
Tssr99471	transcription start site region 99471	631 bp upstream
Tssr99472	transcription start site region 99472	563 bp upstream