rs223627680 SNP Detail

Summary

• ID
  rs223627680
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:128513316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGCT TGCCAAGACC TATAAAAGAG
  Y
  ATCGTTCTCA GCACCTCTGA CTTAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321305852	CHEV_4_128296767	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223627680					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:128513316 () rs orientation: forward

Symbol	Name	Function Class
Rr599982	regulatory region 599982	589 bp distal
Rr599983	regulatory region 599983	210 bp distal
Tlr12	toll-like receptor 12	904 bp upstream
Tssr43437	transcription start site region 43437	1196 bp upstream
Tssr43438	transcription start site region 43438	926 bp upstream
Tssr43439	transcription start site region 43439	898 bp upstream
Tssr43440	transcription start site region 43440	877 bp upstream