rs223628718 SNP Detail

Summary

• ID
  rs223628718
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:84504410 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGTGG AAGACTTAAA
  GGTCTCCAAG GTCTCCAGTT ATAGCTCAGT GGTAAGATGC TTAGCTAGCA AGCATGAACC
  ACGGGGTCCC CAGCTCCACA CAAGACAAAA CAGCCATGTT AACATGTGAT TGATGCTCAG
  ATAGCTGGTG TGATATTAGC AGGGCAGCTG ATGTCCTTTG GGCCCTGGCG ATGGTTTCTG
  T
  TGGTTCTCTC CAGCTTTACT CTATAATGGC TTTACTCTCT GGATGGAGAC CTAAGTACAG
  AATCCTCTAG ATGGGTTGAT TTCTCATCTG GAATGACAGC AGGTCTATTA CTAGGGTTCC
  ACACTACAAG GTTCTACCTC ACTAATTCAA GAACAGGTCT ATCACTTAAA TCCCCTTGAT
  GTGTTCCAGT GGCACTGTGC                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325261409	CHEV_16_84707767	CHEVERUD	SCREENING_POP	f	SNP	T	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223628718					SNP	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:84504410 () rs orientation: forward

Symbol	Name	Function Class
Gm60965	predicted gene, 60965	within coordinates
Mir155hgit	Mir155 host gene intronic transcript	within coordinates
Rr329073	regulatory region 329073	1879 bp proximal
Rr404940	regulatory region 404940	984 bp upstream
Tssr139159	transcription start site region 139159	1942 bp downstream
Tssr139160	transcription start site region 139160	1874 bp downstream
Tssr139161	transcription start site region 139161	1637 bp downstream
Tssr139162	transcription start site region 139162	1352 bp upstream
Tssr139163	transcription start site region 139163	1528 bp upstream
Tssr139164	transcription start site region 139164	1798 bp upstream
Tssr139165	transcription start site region 139165	1827 bp upstream
Tssr139166	transcription start site region 139166	1860 bp upstream