rs223638271 SNP Detail

Summary

• ID
  rs223638271
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:30738467 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGTCTAGA GCTGGGGTGT GCTGGAGGGA GTGAGGACCA
  GCAGCTGTCA GGGGTAAGGA TGCAAGTGTG GGTTCTGCCC CTCCCCCTCC ACTCACCTTC
  W
  CTGGTCCAGA TGAGAGGGGT GGTCTGGACT CCTGGGCTGG TTTGATCTGG ATCTGGGGTA
  AAAACAGGGT CAGAGAGAGA AGTGAGAAGG GAGCAGCAG                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322138611	CHEV_7_31824061	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223638271					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:30738467 () rs orientation: forward

Symbol	Name	Function Class
Fxyd5	FXYD domain-containing ion transport regulator 5	within coordinates
Gm38984	predicted gene, 38984	within coordinates
Gm71772	predicted gene, 71772	1729 bp downstream
Mir7050	microRNA 7050	1216 bp downstream
Rr368303	regulatory region 368303	1428 bp upstream
Tssr65832	transcription start site region 65832	1625 bp downstream
Tssr65833	transcription start site region 65833	1186 bp downstream
Tssr65834	transcription start site region 65834	1155 bp downstream
Tssr71892	transcription start site region 71892	1948 bp upstream
Tssr71893	transcription start site region 71893	1175 bp upstream
Tssr71894	transcription start site region 71894	1152 bp upstream
Tssr71895	transcription start site region 71895	1123 bp upstream
Tssr71896	transcription start site region 71896	1093 bp upstream
Tssr71897	transcription start site region 71897	17 bp downstream
Tssr71898	transcription start site region 71898	1166 bp downstream