rs223639744 SNP Detail

Summary

• ID
  rs223639744
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:192341490 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GACTCAGTC AATCCACAAG CTGACAAAGT
  TGGGTTTGTT TGTTTTAAAG GACAGCATCC AGACACATGC TTGAAGGAGG CGAATGCCAA
  GCTAACTGAC TGCAGAAGCA GTCTCCCAGC CTAAAGGACC TTCTCTCATT TCATTCATTC
  R
  TTCACTCCCT CCATAAATTC TTGGTGAAGG TTCATTCCAC ACAAGTTTCT CAACTTGCAT
  ATTAGTAAAT GATTAGGGCT TGACCCCTTC TCCCCTGAAG AAAGTTACCA GGGAAATTCA
  GGACCAACTT GTGTTTACCA TAGACCTTGT                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320199397	CHEV_1_194483064	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223639744					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:192341490 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Hhat	hedgehog acyltransferase			Intron
				Noncoding-Transcript-Variant
Rr426372	regulatory region 426372			1233 bp proximal