rs223650447 SNP Detail

Summary

• ID
  rs223650447
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:9881939 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAGTCC TTCGGGGGAG
  CCCAGTTCCA GGCCGGCCTG GCCCGCACTG CTGCCCGGCC TGAAAGGCTC GGCGCCTGCA
  GGCAGCGCTT GAGATTTCTC CCTGGCTGCA AAATCTACAA CCTCGTGTGG ACCAGGACTG
  CATTTCGGCG CTTGCCAGGT GAGTGTGCCT GGCCCCAAGG ACACCGGCAA AGAGAGGTGC
  Y
  TGCTACGTGC GCTCTTTTAT TTAAAAAAGA AAAAAAGAAG AACTCTCCCA ACCAGCGACA
  CTGCTTCCTC GCCCATTTCC GGGCCCCCGA TACTTTTTTT AAATGAACTA GTAACACACT
  TAGGAGCTTT GGCTTGCTCT GCCCAGCCAG GGTCTCTGGC GGTCTCGTGG ACCCAGGAAA
  ACAAACGCGG ATCCAAAAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353056010	MGP_WTSI_2_9798755	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223650447					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353056010	MGP_WTSI_2_9798755	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:9881939 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11183	CpG island 11183	within coordinates
Cpgi11184	CpG island 11184	934 bp proximal
Gata3	GATA binding protein 3	Intron
Gm13256	predicted gene 13256	128 bp upstream
Rr551592	regulatory region 551592	within coordinates
Rr551593	regulatory region 551593	1462 bp proximal
Tssr16061	transcription start site region 16061	991 bp downstream
Tssr22553	transcription start site region 22553	1724 bp upstream
Tssr22554	transcription start site region 22554	315 bp downstream
Tssr22555	transcription start site region 22555	708 bp downstream
Tssr22556	transcription start site region 22556	756 bp downstream
Tssr22557	transcription start site region 22557	858 bp downstream
Tssr22558	transcription start site region 22558	1027 bp downstream
Tssr22559	transcription start site region 22559	1232 bp downstream
Tssr22560	transcription start site region 22560	1310 bp downstream
Tssr22561	transcription start site region 22561	1339 bp downstream
Tssr22562	transcription start site region 22562	1452 bp downstream