rs223653848 SNP Detail

Summary

• ID
  rs223653848
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112640986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGTGAGCG CGAGCGCGGC
  CCCGCAGGCG CCGCCCTCGG GTGGCCCCGA GCCAGGGCCA CGCGGGTAAC GGAGCCCCGC
  CGCAGATCCA GAGCTCCAGC TCTGGTCTGG GTTTCCCGGT TTGTGGGACC TGGCCCTTCC
  CTGCCTAGCT CTCCAGACCC CAAGGAGGGA GGCCAGCGTG GGAAGTGAAT CAGTTTGACT
  Y
  TCAAGAGGCC CAACTGTCCC CATCTTGGGA GCCGGGAGAG ACCGGTCACC GGTGTCCTAA
  AGGCCAGCCA ACACAAGAAA GAAGGCTATT GAGGGCTCAT CCAACCCAGT ACTGCCTGCC
  ACAGCAACTG ATAAGGACTC CCCAGGTGAC AGGGAGGACG GGAGCACACC TGGACACCCA
  GAGGGGGCAG ATTCAGGGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324170082	CHEV_12_113912763	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223653848					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112640986 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	within coordinates
Cpgi5173	CpG island 5173	within coordinates
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	878 bp upstream
Rr473552	regulatory region 473552	1623 bp distal
Rr473553	regulatory region 473553	287 bp distal
Rr473554	regulatory region 473554	131 bp distal
Rr473555	regulatory region 473555	152 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	430 bp proximal
Rr473558	regulatory region 473558	895 bp proximal
Rr473559	regulatory region 473559	1086 bp proximal
Rr473560	regulatory region 473560	1332 bp proximal
Tssr115391	transcription start site region 115391	129 bp downstream
Tssr117877	transcription start site region 117877	525 bp upstream
Tssr117878	transcription start site region 117878	466 bp upstream
Tssr117879	transcription start site region 117879	277 bp upstream
Tssr117880	transcription start site region 117880	185 bp upstream
Tssr117881	transcription start site region 117881	167 bp upstream
Tssr117882	transcription start site region 117882	201 bp downstream
Tssr117883	transcription start site region 117883	222 bp downstream
Tssr117884	transcription start site region 117884	274 bp downstream