rs223654572 SNP Detail

Summary

• ID
  rs223654572
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:53798384 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GATTTCCTGG CAAGGCCATC
  AGTGGACTGT TGACAGGACT GTTGCTCAGT CCTTTTAAAG TGTTTGGGTT TCTGGTGTCC
  TTTGCTCATG TCCAAGGAGA GGCACCGCCT CTTTTAGGTT CCTAAACCGA ATTATCTGCC
  GGTTCTCGCT CTGGGAAAAC CTCTGAAGAA AGCTCAGAAG TGGAACTGTT ACAGTGACTG
  Y
  GACACGGACA GACTTGGCTA TTCAGCTAGA TTAATTCTCC TGCAGTGTTA AAGCCCTTCA
  AATAGCCTCG GAACCCGGGC CTGTATACAA TACGCTGCAC AGAGCCTTTG GAGATTGCTT
  CTTGAGGGGC CCGCCTACTT TGTGCCAGAG CTTATAGCAA TCTTGAACGT TTTCAGGCTC
  CAAGGTGCTC AGGCTTAGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss368344178	MGP_WTSI_6_53771393	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223654572					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T	T	T	T	T	T	C	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss368344178	MGP_WTSI_6_53771393	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:53798384 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17455	CpG island 17455	265 bp distal
Gm68353	predicted gene, 68353	170 bp upstream
Rr146318	regulatory region 146318	within coordinates
Tril	TLR4 interactor with leucine-rich repeats	574 bp upstream
Tssr61057	transcription start site region 61057	926 bp upstream
Tssr61058	transcription start site region 61058	893 bp upstream
Tssr61059	transcription start site region 61059	873 bp upstream
Tssr61060	transcription start site region 61060	821 bp upstream
Tssr61061	transcription start site region 61061	652 bp upstream
Tssr61062	transcription start site region 61062	641 bp upstream
Tssr61063	transcription start site region 61063	562 bp upstream
Tssr61064	transcription start site region 61064	540 bp upstream
Tssr61065	transcription start site region 61065	486 bp upstream
Tssr61066	transcription start site region 61066	444 bp upstream
Tssr61067	transcription start site region 61067	140 bp upstream