rs223655228 SNP Detail

Summary

• ID
  rs223655228
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:3779206 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGAGCCG AAGGCCGAGA
  ACTGCCTGTG AGACATAACA GACATGAGAA GCTGTCAAGA CCATCTCTCT CAGAGCAGAT
  ACATTTTCAC CCTTCCTTAG CAAGGCGCAG CCAGCACCCA CTTCCTCCCT AAGCCTCTCC
  TCCACAGTTC CTCCACAGTT CTCCGGAGCC TGCCTACCAT CTCCACACTG ATCTCTCCTC
  Y
  ACAATTCCTC CACAGTTCTC CGGAGCCTGC CTACCATCTC CACACTGATC TCCTCTCCTC
  TACAGTTCCT CCACAGTTCT CCGGAGCCTG CCTACCATCT CCATGATCTC TCCATGACCC
  CAAGCGTTGC TTACATCTGA AAGTGTGACA TTTTGTAAGC ATTTAAGTCA GCATACATAC
  TTTTCTCTAA TTGCAACGTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325088385	CHEV_16_3961342	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223655228					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3779206 () rs orientation: forward

Symbol	Name	Function Class
D16Mit32	DNA segment, Chr 16, Massachusetts Institute of Technology 32	1573 bp proximal
Nlrc3	NLR family, CARD domain containing 3	within coordinates
Rr326802	regulatory region 326802	1743 bp distal
Tssr139740	transcription start site region 139740	1870 bp upstream
Tssr139741	transcription start site region 139741	1831 bp upstream