rs223666103 SNP Detail

Summary

• ID
  rs223666103
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:122557392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACAG AGATCTGCCT GCCTCTGCCT
  Y
  CCGAGTGATG GGATTAAAGG TGTGT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322845216	CHEV_8_124354553	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223666103					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:122557392 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21206	CpG island 21206	783 bp distal
Gm24283	predicted gene, 24283	111 bp downstream
Gm64252	predicted gene, 64252	338 bp downstream
Klhdc4	kelch domain containing 4	1084 bp upstream
Rr368654	regulatory region 368654	937 bp downstream
Rr401186	regulatory region 401186	1951 bp upstream
Rr671929	regulatory region 671929	959 bp distal
Rr671930	regulatory region 671930	370 bp distal
Rr671931	regulatory region 671931	1710 bp proximal
Tssr79828	transcription start site region 79828	964 bp downstream
Tssr83245	transcription start site region 83245	1138 bp upstream
Tssr83246	transcription start site region 83246	1082 bp upstream