rs223677829 SNP Detail

Summary

• ID
  rs223677829
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:46142116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATCCCT TCCTAAGAAG
  GCTCCAAGGG AAATGGATGG CCAGGCAAAG CAACAAGGAA CCCCAAAAGG GCCCCACAGA
  GGCTCAGAAC ACTAGTGCTG TAAACCAGGA TGAGAGTGTC TGGCAATAGG ACTGGCTTTG
  AGACCGCTGG TTTCTTGTGC TAGCCGAGTT TCCAGGTGGG GTCCAGAGGG TGCAGGACGG
  K
  AGCCTCTTCC ACTCCCTAGA GCCAGGATTC CTTCAGGAGC CAGGAAGATT GGAGTTATTG
  GGTGGGTGCT AATAAAAAGC CTGGAGCTGA ACCCGATCTC GGTAAACAAT TCCCTTTGAT
  CTTTCCCTCC GGTGCACCCA CACAGTGTGC TGAAAGGGTC AAGGCTGCAG CTACTCTACC
  TGACAGTTGG ATACAAAAAC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377451239	MGP_WTSI_9_46038901	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223677829					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377451239	MGP_WTSI_9_46038901	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:46142116 () rs orientation: forward

Symbol	Name	Function Class
Apoa1	apolipoprotein A-I	349 bp downstream
Cpgi21701	CpG island 21701	313 bp distal
Rr195182	regulatory region 195182	1916 bp distal
Rr195183	regulatory region 195183	1116 bp distal
Rr206362	regulatory region 206362	within coordinates
Tssr84841	transcription start site region 84841	1974 bp downstream
Tssr84842	transcription start site region 84842	1872 bp downstream
Tssr84843	transcription start site region 84843	1838 bp downstream
Tssr84844	transcription start site region 84844	1664 bp downstream
Tssr84845	transcription start site region 84845	1627 bp downstream
Tssr84846	transcription start site region 84846	1572 bp downstream
Tssr84847	transcription start site region 84847	910 bp downstream
Tssr84848	transcription start site region 84848	832 bp downstream
Tssr84849	transcription start site region 84849	796 bp downstream
Tssr84850	transcription start site region 84850	754 bp downstream
Tssr84851	transcription start site region 84851	719 bp downstream
Tssr84852	transcription start site region 84852	622 bp downstream
Tssr84853	transcription start site region 84853	588 bp downstream
Tssr84854	transcription start site region 84854	575 bp downstream
Tssr84855	transcription start site region 84855	555 bp downstream
Tssr84856	transcription start site region 84856	544 bp downstream
Tssr84857	transcription start site region 84857	422 bp downstream
Tssr84858	transcription start site region 84858	385 bp downstream
Tssr89313	transcription start site region 89313	843 bp upstream
Tssr89314	transcription start site region 89314	815 bp upstream
Tssr89315	transcription start site region 89315	792 bp upstream
Tssr89316	transcription start site region 89316	772 bp upstream
Tssr89317	transcription start site region 89317	763 bp upstream
Tssr89318	transcription start site region 89318	739 bp upstream
Tssr89319	transcription start site region 89319	729 bp upstream
Tssr89320	transcription start site region 89320	716 bp upstream
Tssr89321	transcription start site region 89321	691 bp upstream
Tssr89322	transcription start site region 89322	608 bp upstream
Tssr89323	transcription start site region 89323	556 bp upstream
Tssr89324	transcription start site region 89324	528 bp upstream
Tssr89325	transcription start site region 89325	503 bp upstream
Tssr89326	transcription start site region 89326	469 bp upstream
Tssr89327	transcription start site region 89327	355 bp upstream