rs223681079 SNP Detail

Summary

• ID
  rs223681079
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:163187428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AAGATTGGG TATGACAAGT CTGTCTCTGT
  GGGTCTGCAG TTTATGAACA GATCTCATAG CAGGAGTGTT TCTGAGGGTG TTAGGCTCAA
  AGGAAAGGTC TATGTGAAGT ATACTATGTA CCTTTAAAAA TCAACTTCCA TCAAACAGTT
  Y
  AAACATTTCT TTCCCACAAT TTAGAAAACA TTTCAGAAGT CATTAAAAAT CCATTTAAAA
  ACATCAACCA TGTGTTGTTC TCCATTGTAA ATACATTTCC TCAACCCTCC ATTTCTTAAT
  TAATATAAAT CAAGATAACT CCCTTGCTAA                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320084736	CHEV_1_165289990	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223681079					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:163187428 () rs orientation: forward

Symbol	Name	Function Class
Rr696	regulatory region 696	1095 bp proximal
Rr846	regulatory region 846	within coordinates
Rr407134	regulatory region 407134	1580 bp proximal
Rr422080	regulatory region 422080	1330 bp distal
Rr422081	regulatory region 422081	1481 bp proximal
Tssr9725	transcription start site region 9725	1472 bp downstream