rs223684990 SNP Detail

Summary

• ID
  rs223684990
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:57172572 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCAG TGTAGTCTCT ATCATCTGTA
  W
  GTCCTGGGCA GTTACTTGAC GACTG                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325201080	CHEV_16_57352322	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223684990					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:57172572 () rs orientation: forward

Symbol	Name	Function Class
Cmss1	cms small ribosomal subunit 1	within coordinates
Filip1l	filamin A interacting protein 1-like	804 bp upstream
Rr517288	regulatory region 517288	435 bp proximal
Rr517289	regulatory region 517289	1829 bp proximal
Tssr138825	transcription start site region 138825	562 bp upstream
Tssr138826	transcription start site region 138826	604 bp upstream
Tssr138827	transcription start site region 138827	773 bp upstream
Tssr138828	transcription start site region 138828	797 bp upstream
Tssr138829	transcription start site region 138829	893 bp upstream
Tssr138830	transcription start site region 138830	1029 bp upstream
Tssr138831	transcription start site region 138831	1062 bp upstream
Tssr138832	transcription start site region 138832	1087 bp upstream
Tssr141600	transcription start site region 141600	1631 bp upstream
Tssr141601	transcription start site region 141601	923 bp downstream
Tssr141602	transcription start site region 141602	971 bp downstream