rs223685386 SNP Detail

Summary

• ID
  rs223685386
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:72812403 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCCTCCTGA GTACTGGGAT
  TAAAAGTGGG GGCCATCTCC GCCAACTACT TCGTGGTAAT TTTTAATACA GTGACACATG
  TTCTCTTTCT CTTGTGTCAT GCAAGCAAGA ACAGTCTTTC AGGGCCAAAA ACCAGATAAC
  TCAAACTAGC TGTTTTGAGG CAAAGCTCTT AAAAATGCAC ATCAGTGCTG GGCGGTGTTG
  R
  CACACGCCTT TAATCCCAGC ACTTGGGAGG CAGAGGCAGG CGGATTTCTG AGTTCAAAGC
  CAACCTGGTC TACAGAGTGA GTTCCAGGAC AGACAGGGCT ACACAGAGAA ACCCTGTCTC
  GAAAAAACAA AAACCAAAAA AAAAAAAAAA AAAAAAAAAA GAATGAACAT CAGCAAGAGT
  ATGACTCAGC ATAAGGTGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354450980	MGP_WTSI_2_72820116	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223685386					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354450980	MGP_WTSI_2_72820116	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:72812403 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11763	CpG island 11763	963 bp distal
D130067C23Rik	RIKEN cDNA D130067C23 gene	459 bp downstream
Rr373352	regulatory region 373352	730 bp downstream
Rr559064	regulatory region 559064	1123 bp distal
Rr559065	regulatory region 559065	1258 bp proximal
Sp3	trans-acting transcription factor 3	1613 bp upstream
Sp3os	trans-acting transcription factor 3, opposite strand	within coordinates
Tssr24526	transcription start site region 24526	1588 bp upstream
Tssr24527	transcription start site region 24527	1147 bp upstream
Tssr24528	transcription start site region 24528	1119 bp upstream