rs223690688 SNP Detail

Summary

• ID
  rs223690688
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31149273 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCGGCGCC GCTGGCTTCG
  TTCCCTCCCC TCCCCCGCCC GCCGCCCTCG CTGTCCCCCG GGCGGCCGGA GACGGCGGCG
  GCGTCTGCGG GAAGCCGTGT CTCCGCAGTG ACGTGGGCGG GCCGCGGGCC GGGTGACGTC
  AGAGGCTGTG TGTAGCGATG TGTGTGGGGT TCGGAGCGGC GCCGGCACAG CGAAGGCGGC
  K
  GGCGAGCGAC GGCGACGGCG ACGGCGGGCA CAGGTGCGGC CGCAGGTCGC GAGGGGACGC
  GAGGGGCGTG CGGCCTCTGG GGGCGCTGAG GCGGCGGCGG CGGGGGTGAT GGGGAGGGCA
  CAGAGCCCGG GGGTCTGCCC GGGCGCGGAG GGCCTGAGTG GGGCGTCCGG GATGCGTGGG
  GGTCCCGGGC GGGGTCGCGG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss357433263	MGP_WTSI_3_30994046	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs223690688					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	G	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357433263	MGP_WTSI_3_30994046	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31149273 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13048	CpG island 13048	within coordinates
Gm65753	predicted gene, 65753	within coordinates
Gm65762	predicted gene, 65762	1123 bp downstream
Rr397631	regulatory region 397631	1307 bp downstream
Rr574879	regulatory region 574879	1217 bp distal
Rr574880	regulatory region 574880	826 bp distal
Rr574881	regulatory region 574881	within coordinates
Rr574882	regulatory region 574882	12 bp proximal
Rr574883	regulatory region 574883	43 bp proximal
Rr574884	regulatory region 574884	707 bp proximal
Skil	SKI-like	within coordinates
Tssr28706	transcription start site region 28706	1217 bp downstream
Tssr28707	transcription start site region 28707	1074 bp downstream
Tssr28708	transcription start site region 28708	436 bp downstream
Tssr28709	transcription start site region 28709	412 bp downstream
Tssr28710	transcription start site region 28710	395 bp downstream
Tssr28711	transcription start site region 28711	176 bp downstream
Tssr28712	transcription start site region 28712	148 bp downstream
Tssr28713	transcription start site region 28713	1 bp downstream
Tssr28714	transcription start site region 28714	773 bp upstream
Tssr28715	transcription start site region 28715	1250 bp upstream
Tssr28716	transcription start site region 28716	1716 bp upstream
Tssr32911	transcription start site region 32911	703 bp downstream