rs223704876 SNP Detail

Summary

• ID
  rs223704876
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:110680517 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGTTCCT AACATCCACA
  TGGCAGCTCA CAACTCCAGT CTCAGAGGAT CTGATGCCCT CTTCTGACAC TGTACACAGA
  AATGTATGCA GACATACATT CAGACAAAAT AATCCCCCAC CCCACCCCTG TAATCCATTT
  ACTCTTTATT CTAGAACCAC AGCACATTAG TGGGAATTGG TAACGACTTT GTTTTTTGAG
  W
  CAGGGTTTCT TTGTGTAGCC CTGCCTGTCC TGGAACTCAC TCTCTAGACC AGACTGGCCT
  TGAAATCAGA AATCCGCCTG CCTCTGCCTC CCAAGTGCTG GGATTAAAGC CGTGCGCCAC
  CACTGCCAGG CTTTTATGAC TGGCCCTTTC TGAACACCCC CTCCAATGTA TCTACTACCC
  ACTCCCAAAA CCATACCTGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322401267	CHEV_7_118224824	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223704876					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:110680517 () rs orientation: forward

Symbol	Name	Function Class
Cpgi19582	CpG island 19582	661 bp proximal
Eif4g2	eukaryotic translation initiation factor 4, gamma 2	within coordinates
Gm57201	predicted gene, 57201	1255 bp upstream
Rr166519	regulatory region 166519	1316 bp distal
Rr166520	regulatory region 166520	within coordinates
Rr381309	regulatory region 381309	within coordinates
Tssr2372	transcription start site region 2372	988 bp upstream
Tssr68538	transcription start site region 68538	1117 bp downstream
Tssr68539	transcription start site region 68539	1864 bp upstream
Tssr68540	transcription start site region 68540	1900 bp upstream
Tssr74294	transcription start site region 74294	1973 bp upstream
Tssr74295	transcription start site region 74295	997 bp upstream
Tssr74296	transcription start site region 74296	364 bp upstream
Tssr74297	transcription start site region 74297	286 bp downstream
Tssr74298	transcription start site region 74298	716 bp downstream
Tssr74299	transcription start site region 74299	905 bp downstream
Tssr74300	transcription start site region 74300	1137 bp downstream
Tssr74301	transcription start site region 74301	1219 bp downstream
Tssr74302	transcription start site region 74302	1298 bp downstream
Tssr74303	transcription start site region 74303	1687 bp downstream