rs223710039 SNP Detail

Summary

• ID
  rs223710039
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:167619269 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACTTACAT CCTAATCAGA
  TGCTATGGAA GATAGGGATT GTAGGCAAGC CTTGCTCCAG GACCCTCAGC CTCTTCTAAA
  GTGAATGGGC TAGCTCTTAT CTGTCTGTGC AACTCTAGTG TTAACTTTGG ATAGAACCCA
  TCCCTGCTGT TATTTATTAA GTGCCTCCTG TATGCAAACT CATGCTCATC TGCCCCCACC
  Y
  CCTTCCTCCA TCCTCTCCTC CCTCCATCCC AGCAGGGACT CACCACACTT CCCAAGGGAG
  GACAGTACTG GGGCTTTGCC CACAGAGGAG GAAGTGGGGG TTGGGTCGGC TGCTGACGCA
  GCTGTGACGT CAGAGCCGGC CACAGGCGGC GGCCAGCCCG CGCTGCTGGT ACCCCGTGTG
  CCTGCTGGCC GTGGGCCCCC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356511848	MGP_WTSI_2_167602849	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223710039					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356511848	MGP_WTSI_2_167602849	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:167619269 () rs orientation: forward

Symbol	Name	Function Class
9230111E07Rik	RIKEN cDNA 9230111E07 gene	115 bp upstream
Cpgi12755	CpG island 12755	84 bp proximal
Gm14321	predicted gene 14321	142 bp upstream
Gm32287	predicted gene, 32287	within coordinates
Rr56124	regulatory region 56124	1668 bp distal
Rr56125	regulatory region 56125	within coordinates
Tssr772	transcription start site region 772	1654 bp downstream
Tssr773	transcription start site region 773	584 bp downstream
Tssr774	transcription start site region 774	647 bp downstream
Tssr21849	transcription start site region 21849	1796 bp downstream
Tssr21850	transcription start site region 21850	126 bp upstream
Tssr21851	transcription start site region 21851	743 bp upstream
Tssr21852	transcription start site region 21852	808 bp upstream
Tssr27804	transcription start site region 27804	1948 bp upstream
Tssr27805	transcription start site region 27805	1870 bp upstream
Tssr27806	transcription start site region 27806	67 bp upstream
Tssr27807	transcription start site region 27807	549 bp downstream
Tssr27808	transcription start site region 27808	571 bp downstream