rs223710853 SNP Detail

Summary

• ID
  rs223710853
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:137746795 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAAAAGGTA GGCATTCCTC
  TGGGTCTTTA TTCTAACCAT CAGCTACCAG CCCAGCCCCA TTTTTCTGCC TTATTGCAAG
  CCAGTTTCTC TAAGGAATTG GGGTAGGGGG CGGGGCATAT CACCCTTAGT AGCTTTTAGT
  ACCCTAGACG CAGGCTTCTC CTGGAGTGTG GGATGGGGTG AACTCATGGA CTAGCTAGTG
  Y
  GAGGTAAGGA AGCAGTTGGG AAGGGGTTAA ATCCTCTGTG CTTTCTGCTT CCTGTCTCCA
  AAAGAGGAAG CTATCCACAA GTCTGGGCTG GGGGCAGGAT GCCTATGCCC CTGGTGTGCG
  TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGTG TTGGGGGTTG
  GGCACTTAGG GTTGGGAGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss366884402	MGP_WTSI_5_138189761	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs223710853					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366884402	MGP_WTSI_5_138189761	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:137746795 () rs orientation: forward

Symbol	Name	Function Class
Gm57848	predicted gene, 57848	within coordinates
Gm68923	predicted gene, 68923	1478 bp downstream
Rr622972	regulatory region 622972	1539 bp distal
Rr622973	regulatory region 622973	1213 bp distal
Rr622974	regulatory region 622974	940 bp distal
Rr622975	regulatory region 622975	within coordinates
Tsc22d4	Tsc22 domain family, member 4	within coordinates
Tssr49373	transcription start site region 49373	1916 bp downstream
Tssr49374	transcription start site region 49374	1882 bp downstream
Tssr49375	transcription start site region 49375	1832 bp downstream
Tssr49376	transcription start site region 49376	1616 bp downstream
Tssr49377	transcription start site region 49377	1558 bp downstream
Tssr49378	transcription start site region 49378	1444 bp downstream
Tssr49379	transcription start site region 49379	1000 bp downstream
Tssr49380	transcription start site region 49380	891 bp downstream
Tssr49381	transcription start site region 49381	849 bp downstream
Tssr49382	transcription start site region 49382	799 bp downstream
Tssr49383	transcription start site region 49383	433 bp upstream
Tssr54036	transcription start site region 54036	543 bp upstream