rs223711938 SNP Detail

Summary

• ID
  rs223711938
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32384534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCTGTGTG GCCACTGGTG
  TGCTTGTCTG GGTCATGGAT TGGCAGCTAT AAATGTGACC TTGAACATGA ATGCCTAGCA
  GGTCTTGGGT GACCTATGCC TGAATGCACA TCAACATGTG AGCAGCAAAC ACATAGGTGT
  GTCTTGTGTG TGCCAAGTGT GCATCTATGG CTGTACTAAA CCTGTGCACA TGCATTTTTT
  Y
  CCCTTTCTAT GTGTGACAGG CCATGAGTCT GCACTGGCCC CGCGGGGGCG GTGGCTCCTG
  CCCAGTCCTG CCTAGTAGAG CCTAGAGGCT AAGCCACTCT CTATGCAACT CTCACCCGGC
  CCAGCACTGA GTCCCACCAT AGGAGCCCTA GAACCCCTGG CCACAGCCAA CTGCCTATGC
  CCCTCCCCCG CTGATCAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325361632	CHEV_17_32302505	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223711938					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32384534 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8964	CpG island 8964	29 bp proximal
Cpgi8965	CpG island 8965	1070 bp proximal
Notch3	notch 3	within coordinates
Rr339597	regulatory region 339597	within coordinates
Rr370218	regulatory region 370218	1017 bp downstream
Tssr147343	transcription start site region 147343	545 bp upstream
Tssr147344	transcription start site region 147344	1188 bp downstream
Tssr147345	transcription start site region 147345	1319 bp downstream