rs223727992 SNP Detail

Summary

• ID
  rs223727992
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:107148428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATACCTG ATGGATCCTG
  TATTGGGCCA TCCATCTTCT CTCTACAATA ATAAAAACTA GTGTTTTCCA AGGAATGTTT
  TCTAGTATGC TAATTCAGGA TGAGCATCTC CAACCCAAAA CTCTAAAATC TAGACGTCTC
  CAAAGTAGAG AACTTTCTGA CATAATGTGA CCCATCCAAA ATTCTACACA GTAGAACCTT
  K
  TTGCATGCAC AAAACTACTT AAAATGCTAT AGAAAACTGC CTTTAGGTAT GTGTATAAGA
  TGATCATGAA ACAGACAGAA TTCAAGTTTA GACTTAAACC TCATCTAAGA TGTACCATTG
  TGTACATGCA AATATTCAGA TTTGGGGGGG GAGACCCTCA AACCTGGGAC ACTCAAGGAC
  TTCAGAGAAG AGGTATTCAG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320864897	CHEV_3_107044030	CHEVERUD	SCREENING_POP	f	SNP	G	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs223727992					SNP	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:107148428 () rs orientation: forward

Symbol	Name	Function Class
Gm66085	predicted gene, 66085	754 bp upstream
Prok1	prokineticin 1	1405 bp upstream
Rr582947	regulatory region 582947	412 bp proximal
Rr582948	regulatory region 582948	765 bp proximal
Tssr31192	transcription start site region 31192	677 bp upstream
Tssr31193	transcription start site region 31193	748 bp upstream
Tssr31194	transcription start site region 31194	803 bp upstream